SNP Detail For rs4788815
1.Mapping Information
Human SNP ID rs4788815
Human chromosome chr16
Human SNP position 71600908
Pig chromosome chr6
Pig SNP position 14098027
2.Annotation Information
PubMed ID22286219
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22286219
StudyGenome-wide association study identifies multiple loci influencing human serum metabolite levels.
Disease/TraitMetabolite levels
Initial sample8,330 European ancestry individuals
Replication sampleNA
Region16q22.2
Chromosome idchr16
Chromosome position71600908
Reported geneTAT
Mapped geneLOC105371334
Upstream gene id
Downstream gene id
SNP gene ids105371334
Upstream gene distance
Downstream gene distance
SNP risk allelers4788815-?
SNPsrs4788815
Merged0
SNP id current4788815
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.00000000000000002
Pvalue mlog16.698970004336
P value text(Phe, Tyr)
Or beta0.15
%95 Ci[0.11-0.19] unit increase
PlatformIllumina [~ 7700000] (imputed)
CNVN
Mapped traitmetabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004725
Study accessionGCST001391
PubMed ID22916037
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22916037
StudyNovel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.
Disease/TraitMetabolite levels
Initial sample6,608 European ancestry individuals
Replication sampleNA
Region16q22.2
Chromosome idchr16
Chromosome position71600908
Reported geneTAT
Mapped geneLOC105371334
Upstream gene id
Downstream gene id
SNP gene ids105371334
Upstream gene distance
Downstream gene distance
SNP risk allelers4788815-?
SNPsrs4788815
Merged0
SNP id current4788815
Contextintergenic_variant
Intergenic0
Allele frequency0.35
P value0.0000000000004
Pvalue mlog12.397940008672
P value text
Or beta
%95 Ci
PlatformIllumina [~ 2000000] (imputed)
CNVN
Mapped traitcoronary artery calcification
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004723
Study accessionGCST001639