Human SNP ID | rs4788815 |
---|---|
Human chromosome | chr16 |
Human SNP position | 71600908 |
Pig chromosome | chr6 |
Pig SNP position | 14098027 |
PubMed ID | 22286219 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22286219 |
Study | Genome-wide association study identifies multiple loci influencing human serum metabolite levels. |
Disease/Trait | Metabolite levels |
Initial sample | 8,330 European ancestry individuals |
Replication sample | NA |
Region | 16q22.2 |
Chromosome id | chr16 |
Chromosome position | 71600908 |
Reported gene | TAT |
Mapped gene | LOC105371334 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371334 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4788815-? |
SNPs | rs4788815 |
Merged | 0 |
SNP id current | 4788815 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000000000000002 |
Pvalue mlog | 16.698970004336 |
P value text | (Phe, Tyr) |
Or beta | 0.15 |
%95 Ci | [0.11-0.19] unit increase |
Platform | Illumina [~ 7700000] (imputed) |
CNV | N |
Mapped trait | metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004725 |
Study accession | GCST001391 |
PubMed ID | 22916037 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22916037 |
Study | Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis. |
Disease/Trait | Metabolite levels |
Initial sample | 6,608 European ancestry individuals |
Replication sample | NA |
Region | 16q22.2 |
Chromosome id | chr16 |
Chromosome position | 71600908 |
Reported gene | TAT |
Mapped gene | LOC105371334 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371334 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4788815-? |
SNPs | rs4788815 |
Merged | 0 |
SNP id current | 4788815 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.35 |
P value | 0.0000000000004 |
Pvalue mlog | 12.397940008672 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [~ 2000000] (imputed) |
CNV | N |
Mapped trait | coronary artery calcification |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004723 |
Study accession | GCST001639 |