SNP Detail For rs4785763
1.Mapping Information
Human SNP ID rs4785763
Human chromosome chr16
Human SNP position 90000528
Pig chromosome chr6
Pig SNP position 213269
2.Annotation Information
PubMed ID19578364
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19578364
StudyGenome-wide association study identifies three loci associated with melanoma risk.
Disease/TraitMelanoma
Initial sample1,539 European ancestry cases, 3,917 European ancestry controls
Replication sample2,312 European ancestry cases, 1,867 European ancestry controls
Region16q24.3
Chromosome idchr16
Chromosome position90000528
Reported geneMC1R
Mapped geneAFG3L1P
Upstream gene id
Downstream gene id
SNP gene ids172
Upstream gene distance
Downstream gene distance
SNP risk allelers4785763-A
SNPsrs4785763
Merged0
SNP id current4785763
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.32
P value6E-22
Pvalue mlog21.2218487496163
P value text
Or beta1.36
%95 Ci[1.28-1.45]
PlatformIllumina [~ 317000]
CNVN
Mapped traitmelanoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000756
Study accessionGCST000437