Human SNP ID | rs4785763 |
---|---|
Human chromosome | chr16 |
Human SNP position | 90000528 |
Pig chromosome | chr6 |
Pig SNP position | 213269 |
PubMed ID | 19578364 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19578364 |
Study | Genome-wide association study identifies three loci associated with melanoma risk. |
Disease/Trait | Melanoma |
Initial sample | 1,539 European ancestry cases, 3,917 European ancestry controls |
Replication sample | 2,312 European ancestry cases, 1,867 European ancestry controls |
Region | 16q24.3 |
Chromosome id | chr16 |
Chromosome position | 90000528 |
Reported gene | MC1R |
Mapped gene | AFG3L1P |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 172 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4785763-A |
SNPs | rs4785763 |
Merged | 0 |
SNP id current | 4785763 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 6E-22 |
Pvalue mlog | 21.2218487496163 |
P value text | |
Or beta | 1.36 |
%95 Ci | [1.28-1.45] |
Platform | Illumina [~ 317000] |
CNV | N |
Mapped trait | melanoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000756 |
Study accession | GCST000437 |