SNP Detail For rs4784934
1.Mapping Information
Human SNP ID rs4784934
Human chromosome chr16
Human SNP position 58426022
Pig chromosome chr6
Pig SNP position 18247806
2.Annotation Information
PubMed ID24952745
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24952745
StudyGenetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.
Disease/TraitQT interval
Initial sampleUp to 70,389 European ancestry individuals, up to 672 Orcadian individuals
Replication sampleUp to 33,316 European ancestry individuals
Region16q21
Chromosome idchr16
Chromosome position58426022
Reported geneCNOT1
Mapped geneGINS3 - LOC105371295
Upstream gene id64785
Downstream gene id105371295
SNP gene ids
Upstream gene distance19878
Downstream gene distance35516
SNP risk allelers4784934-A
SNPsrs4784934
Merged0
SNP id current4784934
Contextintron_variant
Intergenic1
Allele frequency0.254
P value0.000000006
Pvalue mlog8.22184874961635
P value text
Or beta0.67
%95 Ci[0.43-0.91] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitQT interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004682
Study accessionGCST002500