Human SNP ID | rs4784934 |
---|---|
Human chromosome | chr16 |
Human SNP position | 58426022 |
Pig chromosome | chr6 |
Pig SNP position | 18247806 |
PubMed ID | 24952745 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24952745 |
Study | Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. |
Disease/Trait | QT interval |
Initial sample | Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals |
Replication sample | Up to 33,316 European ancestry individuals |
Region | 16q21 |
Chromosome id | chr16 |
Chromosome position | 58426022 |
Reported gene | CNOT1 |
Mapped gene | GINS3 - LOC105371295 |
Upstream gene id | 64785 |
Downstream gene id | 105371295 |
SNP gene ids | |
Upstream gene distance | 19878 |
Downstream gene distance | 35516 |
SNP risk allele | rs4784934-A |
SNPs | rs4784934 |
Merged | 0 |
SNP id current | 4784934 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.254 |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | |
Or beta | 0.67 |
%95 Ci | [0.43-0.91] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | QT interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004682 |
Study accession | GCST002500 |