Human SNP ID | rs4784227 |
---|---|
Human chromosome | chr16 |
Human SNP position | 52565276 |
Pig chromosome | chr6 |
Pig SNP position | 29286506 |
PubMed ID | 20585626 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20585626 |
Study | Identification of a functional genetic variant at 16q12.1 for breast cancer risk: results from the Asia Breast Cancer Consortium. |
Disease/Trait | Breast cancer |
Initial sample | 2,073 Chinese ancestry cases, 2,084 Chinese ancestry controls |
Replication sample | 15,159 East Asian ancestry cases, 12,993 East Asian ancestry controls, 2,797 European ancestry cases, 2,662 European ancestry controls |
Region | 16q12.1 |
Chromosome id | chr16 |
Chromosome position | 52565276 |
Reported gene | TOX3 |
Mapped gene | CASC16 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 643714 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4784227-T |
SNPs | rs4784227 |
Merged | 0 |
SNP id current | 4784227 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.24 |
P value | 1E-28 |
Pvalue mlog | 28 |
P value text | (all races combined) |
Or beta | 1.24 |
%95 Ci | [1.20-1.29] |
Platform | Affymetrix [684457] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST000709 |
PubMed ID | 25327703 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25327703 |
Study | Genome-wide association study of breast cancer in Latinas identifies novel protective variants on 6q25. |
Disease/Trait | Breast cancer |
Initial sample | 1,497 Latino cases, 3,213 Latino controls |
Replication sample | 1,643 Latino cases, 4,971 Latino controls |
Region | 16q12.1 |
Chromosome id | chr16 |
Chromosome position | 52565276 |
Reported gene | TOX3 |
Mapped gene | CASC16 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 643714 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4784227-T |
SNPs | rs4784227 |
Merged | 0 |
SNP id current | 4784227 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.31 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.38 |
%95 Ci | [1.24-1.54] |
Platform | Affymetrix, Illumina [7229558] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST002662 |