Human SNP ID | rs478222 |
---|---|
Human chromosome | chr2 |
Human SNP position | 25078886 |
Pig chromosome | chr3 |
Pig SNP position | 120847222 |
PubMed ID | 21980299 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21980299 |
Study | A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci. |
Disease/Trait | Type 1 diabetes |
Initial sample | 9,934 European ancestry cases, 16,956 European ancestry controls |
Replication sample | 1,120 European ancestry affected trios |
Region | 2p23.3 |
Chromosome id | chr2 |
Chromosome position | 25078886 |
Reported gene | EFR3B, 3NCOA1, C2orf79, CENPO, ADCY3, DNAJC27, POMC, DNMT3A |
Mapped gene | EFR3B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 22979 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs478222-? |
SNPs | rs478222 |
Merged | 0 |
SNP id current | 478222 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.59 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 1.22 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2540000] (imputed) |
CNV | N |
Mapped trait | type I diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001359 |
Study accession | GCST001255 |