SNP Detail For rs478222
1.Mapping Information
Human SNP ID rs478222
Human chromosome chr2
Human SNP position 25078886
Pig chromosome chr3
Pig SNP position 120847222
2.Annotation Information
PubMed ID21980299
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21980299
StudyA genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.
Disease/TraitType 1 diabetes
Initial sample9,934 European ancestry cases, 16,956 European ancestry controls
Replication sample1,120 European ancestry affected trios
Region2p23.3
Chromosome idchr2
Chromosome position25078886
Reported geneEFR3B, 3NCOA1, C2orf79, CENPO, ADCY3, DNAJC27, POMC, DNMT3A
Mapped geneEFR3B
Upstream gene id
Downstream gene id
SNP gene ids22979
Upstream gene distance
Downstream gene distance
SNP risk allelers478222-?
SNPsrs478222
Merged0
SNP id current478222
Contextintron_variant
Intergenic0
Allele frequency0.59
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.22
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 2540000] (imputed)
CNVN
Mapped traittype I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST001255