SNP Detail For rs4780141
1.Mapping Information
Human SNP ID rs4780141
Human chromosome chr15
Human SNP position 33660889
Pig chromosome chr7
Pig SNP position 86678448
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region15q14
Chromosome idchr15
Chromosome position33660889
Reported geneNR
Mapped geneRYR3
Upstream gene id
Downstream gene id
SNP gene ids6263
Upstream gene distance
Downstream gene distance
SNP risk allelers4780141-T
SNPsrs4780141
Merged0
SNP id current4780141
Contextintron_variant
Intergenic0
Allele frequency0.0411
P value0.000001
Pvalue mlog6
P value text(Trans/trans-18:2, EA)
Or beta0.0028
%95 Ci[0.0016-0.004] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans fatty acid measurement, trans/trans-18:2 fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006826
Study accessionGCST002721