Human SNP ID | rs4766578 |
---|---|
Human chromosome | chr12 |
Human SNP position | 111466567 |
Pig chromosome | chr14 |
Pig SNP position | 34672846 |
PubMed ID | 22561518 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22561518 |
Study | Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo. |
Disease/Trait | Vitiligo |
Initial sample | 418 European ancestry cases, 2,810 European ancestry controls |
Replication sample | 1,377 European ancestry cases, 1,284 European ancestry controls |
Region | 12q24.12 |
Chromosome id | chr12 |
Chromosome position | 111466567 |
Reported gene | SH2B3 |
Mapped gene | ATXN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6311 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4766578-T |
SNPs | rs4766578 |
Merged | 0 |
SNP id current | 4766578 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.52 |
P value | 0.000000000000000004 |
Pvalue mlog | 17.397940008672 |
P value text | |
Or beta | 1.32 |
%95 Ci | [NR] |
Platform | Illumina [495821] |
CNV | N |
Mapped trait | Vitiligo |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004208 |
Study accession | GCST001509 |