SNP Detail For rs4766578
1.Mapping Information
Human SNP ID rs4766578
Human chromosome chr12
Human SNP position 111466567
Pig chromosome chr14
Pig SNP position 34672846
2.Annotation Information
PubMed ID22561518
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22561518
StudyGenome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.
Disease/TraitVitiligo
Initial sample418 European ancestry cases, 2,810 European ancestry controls
Replication sample1,377 European ancestry cases, 1,284 European ancestry controls
Region12q24.12
Chromosome idchr12
Chromosome position111466567
Reported geneSH2B3
Mapped geneATXN2
Upstream gene id
Downstream gene id
SNP gene ids6311
Upstream gene distance
Downstream gene distance
SNP risk allelers4766578-T
SNPsrs4766578
Merged0
SNP id current4766578
Contextintron_variant
Intergenic0
Allele frequency0.52
P value0.000000000000000004
Pvalue mlog17.397940008672
P value text
Or beta1.32
%95 Ci[NR]
PlatformIllumina [495821]
CNVN
Mapped traitVitiligo
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004208
Study accessionGCST001509