SNP Detail For rs4766428
1.Mapping Information
Human SNP ID rs4766428
Human chromosome chr12
Human SNP position 110285440
Pig chromosome chr14
Pig SNP position 33487961
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region12q24.11
Chromosome idchr12
Chromosome position110285440
Reported geneATP2A2
Mapped geneATP2A2
Upstream gene id
Downstream gene id
SNP gene ids488
Upstream gene distance
Downstream gene distance
SNP risk allelers4766428-T
SNPsrs4766428
Merged0
SNP id current4766428
Contextintron_variant
Intergenic0
Allele frequency0.474
P value0.000000001
Pvalue mlog9
P value text
Or beta1.068
%95 Ci[1.045-1.091]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region12q24.11
Chromosome idchr12
Chromosome position110285440
Reported geneNR
Mapped geneATP2A2
Upstream gene id
Downstream gene id
SNP gene ids488
Upstream gene distance
Downstream gene distance
SNP risk allelers4766428-T
SNPsrs4766428
Merged0
SNP id current4766428
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta1.07
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048