Human SNP ID | rs4766428 |
---|---|
Human chromosome | chr12 |
Human SNP position | 110285440 |
Pig chromosome | chr14 |
Pig SNP position | 33487961 |
PubMed ID | 25056061 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25056061 |
Study | Biological insights from 108 schizophrenia-associated genetic loci. |
Disease/Trait | Schizophrenia |
Initial sample | 32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls |
Replication sample | 1,513 European ancestry cases, 66,236 European ancestry controls |
Region | 12q24.11 |
Chromosome id | chr12 |
Chromosome position | 110285440 |
Reported gene | ATP2A2 |
Mapped gene | ATP2A2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 488 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4766428-T |
SNPs | rs4766428 |
Merged | 0 |
SNP id current | 4766428 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.474 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 1.068 |
%95 Ci | [1.045-1.091] |
Platform | Affymetrix, Illumina [9005918] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST002539 |
PubMed ID | 26198764 |
Journal | Am J Med Genet B Neuropsychiatr Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26198764 |
Study | Genome-wide association study of schizophrenia in Ashkenazi Jews. |
Disease/Trait | Schizophrenia |
Initial sample | 592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls |
Replication sample | NA |
Region | 12q24.11 |
Chromosome id | chr12 |
Chromosome position | 110285440 |
Reported gene | NR |
Mapped gene | ATP2A2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 488 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4766428-T |
SNPs | rs4766428 |
Merged | 0 |
SNP id current | 4766428 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 1.07 |
%95 Ci | [NR] |
Platform | Illumina [7158791] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST003048 |