Human SNP ID | rs4765623 |
---|---|
Human chromosome | chr12 |
Human SNP position | 124836304 |
Pig chromosome | chr14 |
Pig SNP position | 29992598 |
PubMed ID | 21131975 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21131975 |
Study | Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3. |
Disease/Trait | Renal cell carcinoma |
Initial sample | 3,772 European ancestry cases, 8,505 European ancestry controls |
Replication sample | 2,198 European ancestry cases, 4,918 European ancestry controls |
Region | 12q24.31 |
Chromosome id | chr12 |
Chromosome position | 124836304 |
Reported gene | SCARB1 |
Mapped gene | SCARB1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 949 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4765623-? |
SNPs | rs4765623 |
Merged | 0 |
SNP id current | 4765623 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.34 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.09-1.20] |
Platform | Illumina [586069] |
CNV | N |
Mapped trait | renal cell carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000681 |
Study accession | GCST000907 |