SNP Detail For rs476428
1.Mapping Information
Human SNP ID rs476428
Human chromosome chr5
Human SNP position 131965922
Pig chromosome chr2
Pig SNP position 139587581
2.Annotation Information
PubMed ID25778476
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25778476
StudyA novel Alzheimer disease locus located near the gene encoding tau protein.
Disease/TraitAlzheimer__s disease in APOE e4- carriers
Initial sample7,184 cases, 26,968 controls
Replication sample718 European ancestry cases, 1,699 European ancestry controls
Region5q31.1
Chromosome idchr5
Chromosome position131965922
Reported geneACSL6
Mapped geneACSL6
Upstream gene id
Downstream gene id
SNP gene ids23305
Upstream gene distance
Downstream gene distance
SNP risk allelers476428-G
SNPsrs476428
Merged0
SNP id current476428
Contextintron_variant
Intergenic0
Allele frequency0.81
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.1627907
%95 Ci[1.1-1.23]
PlatformNR [NR]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST002817