SNP Detail For rs4764124
1.Mapping Information
Human SNP ID rs4764124
Human chromosome chr12
Human SNP position 14813670
Pig chromosome chr5
Pig SNP position 61130137
2.Annotation Information
PubMed ID23449627
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23449627
StudyGenome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.
Disease/TraitPubertal anthropometrics
Initial sample7,161 European ancestry males, 6,879 European ancestry females
Replication sample5,133 European ancestry males, 4,577 European ancestry females
Region12p12.3
Chromosome idchr12
Chromosome position14813670
Reported geneC12orf60, HIST4H4
Mapped geneSMCO3, C12orf60
Upstream gene id
Downstream gene id
SNP gene ids440087, 144608
Upstream gene distance
Downstream gene distance
SNP risk allelers4764124-C
SNPsrs4764124
Merged0
SNP id current4764124
Contextintron_variant
Intergenic0
Allele frequency0.52
P value0.0000008
Pvalue mlog6.09691001300805
P value text(Single Height)
Or beta0.05
%95 Ci[0.03-0.07] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST001875