SNP Detail For rs4749884
1.Mapping Information
Human SNP ID rs4749884
Human chromosome chr10
Human SNP position 9602837
Pig chromosome chr10
Pig SNP position 68262978
2.Annotation Information
PubMed ID26443449
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26443449
StudyLarge-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.
Disease/TraitProstate cancer
Initial sample3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls
Replication sample3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls
Region10p14
Chromosome idchr10
Chromosome position9602837
Reported geneintergenic
Mapped geneLOC105376402
Upstream gene id
Downstream gene id
SNP gene ids105376402
Upstream gene distance
Downstream gene distance
SNP risk allelers4749884-C
SNPsrs4749884
Merged
SNP id current4749884
Contextintergenic_variant
Intergenic0
Allele frequency0.533
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.12
%95 Ci[NR]
PlatformIllumina [4550396] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST003148