SNP Detail For rs4731702
1.Mapping Information
Human SNP ID rs4731702
Human chromosome chr7
Human SNP position 130748625
Pig chromosome chr18
Pig SNP position 19153841
2.Annotation Information
PubMed ID20686565
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20686565
StudyBiological, clinical and population relevance of 95 loci for blood lipids.
Disease/TraitHDL cholesterol
Initial sample99,900 European ancestry individuals
Replication sampleNA
Region7q32.2
Chromosome idchr7
Chromosome position130748625
Reported geneKLF14
Mapped geneLOC105375508
Upstream gene id
Downstream gene id
SNP gene ids105375508
Upstream gene distance
Downstream gene distance
SNP risk allelers4731702-T
SNPsrs4731702
Merged0
SNP id current4731702
Contextintergenic_variant
Intergenic0
Allele frequency0.48
P value0.000000000000001
Pvalue mlog15
P value text
Or beta0.59
%95 Ci[0.45-0.73] mg/dL increase
PlatformAffymetrix, Illumina, Perlegen [~ 2600000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000755
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitHDL cholesterol
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region7q32.2
Chromosome idchr7
Chromosome position130748625
Reported geneKLF14
Mapped geneLOC105375508
Upstream gene id
Downstream gene id
SNP gene ids105375508
Upstream gene distance
Downstream gene distance
SNP risk allelers4731702-T
SNPsrs4731702
Merged0
SNP id current4731702
Contextintergenic_variant
Intergenic0
Allele frequency0.49
P value0.00000000000000005
Pvalue mlog16.3010299956639
P value text
Or beta0.029
%95 Ci[NR] unit increase
PlatformNR [NR] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002223