SNP Detail For rs4730273
1.Mapping Information
Human SNP ID rs4730273
Human chromosome chr7
Human SNP position 107839074
Pig chromosome chr9
Pig SNP position 118338205
2.Annotation Information
PubMed ID19122664
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19122664
StudyUlcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.
Disease/TraitUlcerative colitis
Initial sample1,022 European ancestry cases, 2,503 European ancestry controls
Replication sample1,387 European ancestry cases, 1,115 European ancestry controls
Region7q31.1
Chromosome idchr7
Chromosome position107839074
Reported geneintergenic
Mapped geneSLC26A3 - LOC105375444
Upstream gene id1811
Downstream gene id105375444
SNP gene ids
Upstream gene distance35841
Downstream gene distance17405
SNP risk allelers4730273-?
SNPsrs4730273
Merged0
SNP id current4730273
Contextintergenic_variant
Intergenic1
Allele frequency0.7
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.22
%95 Ci
PlatformIllumina [280748]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST000311