Human SNP ID | rs4730273 |
---|---|
Human chromosome | chr7 |
Human SNP position | 107839074 |
Pig chromosome | chr9 |
Pig SNP position | 118338205 |
PubMed ID | 19122664 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19122664 |
Study | Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study. |
Disease/Trait | Ulcerative colitis |
Initial sample | 1,022 European ancestry cases, 2,503 European ancestry controls |
Replication sample | 1,387 European ancestry cases, 1,115 European ancestry controls |
Region | 7q31.1 |
Chromosome id | chr7 |
Chromosome position | 107839074 |
Reported gene | intergenic |
Mapped gene | SLC26A3 - LOC105375444 |
Upstream gene id | 1811 |
Downstream gene id | 105375444 |
SNP gene ids | |
Upstream gene distance | 35841 |
Downstream gene distance | 17405 |
SNP risk allele | rs4730273-? |
SNPs | rs4730273 |
Merged | 0 |
SNP id current | 4730273 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.7 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.22 |
%95 Ci | |
Platform | Illumina [280748] |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST000311 |