Human SNP ID | rs4722585 |
---|---|
Human chromosome | chr7 |
Human SNP position | 26143746 |
Pig chromosome | chr18 |
Pig SNP position | 51030650 |
PubMed ID | 24554482 |
---|---|
Journal | J Neurovirol |
Link | www.ncbi.nlm.nih.gov/pubmed/24554482 |
Study | Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384. |
Disease/Trait | Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy) |
Initial sample | 40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls |
Replication sample | NA |
Region | 7p15.2 |
Chromosome id | chr7 |
Chromosome position | 26143746 |
Reported gene | NFE2L3 |
Mapped gene | LOC105375199 - NFE2L3 |
Upstream gene id | 105375199 |
Downstream gene id | 9603 |
SNP gene ids | |
Upstream gene distance | 12816 |
Downstream gene distance | 8481 |
SNP risk allele | rs4722585-? |
SNPs | rs4722585 |
Merged | 0 |
SNP id current | 4722585 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (AA) |
Or beta | 0.2 |
%95 Ci | [NR] |
Platform | Illumina [936149] |
CNV | N |
Mapped trait | response to reverse transcriptase inhibitor, HIV-1 infection, peripheral neuropathy |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0061479, http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0003100 |
Study accession | GCST002366 |
PubMed ID | 24554482 |
Journal | J Neurovirol |
Link | www.ncbi.nlm.nih.gov/pubmed/24554482 |
Study | Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384. |
Disease/Trait | Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy) |
Initial sample | 19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls |
Replication sample | NA |
Region | 7p15.2 |
Chromosome id | chr7 |
Chromosome position | 26143746 |
Reported gene | NFE2L3 |
Mapped gene | LOC105375199 - NFE2L3 |
Upstream gene id | 105375199 |
Downstream gene id | 9603 |
SNP gene ids | |
Upstream gene distance | 12816 |
Downstream gene distance | 8481 |
SNP risk allele | rs4722585-? |
SNPs | rs4722585 |
Merged | 0 |
SNP id current | 4722585 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (AA) |
Or beta | 0.2 |
%95 Ci | [NR] |
Platform | Illumina [936149] |
CNV | N |
Mapped trait | response to reverse transcriptase inhibitor, HIV-1 infection, peripheral neuropathy |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0061479, http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0003100 |
Study accession | GCST002365 |