Human SNP ID | rs4714699 |
---|---|
Human chromosome | chr6 |
Human SNP position | 43834826 |
Pig chromosome | chr7 |
Pig SNP position | 44532881 |
PubMed ID | 25673412 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 6p21.1 |
Chromosome id | chr6 |
Chromosome position | 43834826 |
Reported gene | VEGFA |
Mapped gene | LOC105375070 - LOC105375069 |
Upstream gene id | 105375070 |
Downstream gene id | 105375069 |
SNP gene ids | |
Upstream gene distance | 13124 |
Downstream gene distance | 2106 |
SNP risk allele | rs4714699-C |
SNPs | rs4714699 |
Merged | 0 |
SNP id current | 4714699 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.3799 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (EA, women) |
Or beta | 0.0241 |
%95 Ci | [0.014-0.034] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 6p21.1 |
Chromosome id | chr6 |
Chromosome position | 43834826 |
Reported gene | VEGFA |
Mapped gene | LOC105375070 - LOC105375069 |
Upstream gene id | 105375070 |
Downstream gene id | 105375069 |
SNP gene ids | |
Upstream gene distance | 13124 |
Downstream gene distance | 2106 |
SNP risk allele | rs4714699-C |
SNPs | rs4714699 |
Merged | 0 |
SNP id current | 4714699 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.3747 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (women) |
Or beta | 0.0233 |
%95 Ci | [0.014-0.033] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |