SNP Detail For rs4713555
1.Mapping Information
Human SNP ID rs4713555
Human chromosome chr6
Human SNP position 32607747
Pig chromosome chr7
Pig SNP position 29140895
2.Annotation Information
PubMed ID26482879
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26482879
StudyMulti-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.
Disease/TraitAtopic dermatitis
Initial sample18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls
Replication sample30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32607747
Reported geneHLA-DRB1, HLA-DQA1
Mapped geneHLA-DRB1 - HLA-DQA1
Upstream gene id3123
Downstream gene id3117
SNP gene ids
Upstream gene distance17911
Downstream gene distance29649
SNP risk allelers4713555-G
SNPsrs4713555
Merged0
SNP id current4713555
Contextintron_variant
Intergenic1
Allele frequency0.73
P value0.000000005
Pvalue mlog8.30102999566398
P value text(EA, fixed effects)
Or beta1.098901
%95 Ci
PlatformIllumina [15539996] (imputed)
CNVN
Mapped traitatopic eczema
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000274
Study accessionGCST003184