SNP Detail For rs4713266
1.Mapping Information
Human SNP ID rs4713266
Human chromosome chr6
Human SNP position 11218797
Pig chromosome chr7
Pig SNP position 8301318
2.Annotation Information
PubMed ID25217961
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25217961
StudyA meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
Disease/TraitProstate cancer
Initial sample34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls
Replication sampleNA
Region6p24.2
Chromosome idchr6
Chromosome position11218797
Reported geneNEDD9
Mapped geneNEDD9
Upstream gene id
Downstream gene id
SNP gene ids4739
Upstream gene distance
Downstream gene distance
SNP risk allelers4713266-C
SNPsrs4713266
Merged0
SNP id current4713266
Contextintron_variant
Intergenic0
Allele frequency0.52
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.06
%95 Ci[1.04-1.08]
PlatformAffymetrix, Illumina [up to 16852405] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002606
PubMed ID25217961
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25217961
StudyA meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
Disease/TraitProstate cancer
Initial sample34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls
Replication sampleNA
Region6p24.2
Chromosome idchr6
Chromosome position11218797
Reported geneNEDD9
Mapped geneNEDD9
Upstream gene id
Downstream gene id
SNP gene ids4739
Upstream gene distance
Downstream gene distance
SNP risk allelers4713266-C
SNPsrs4713266
Merged0
SNP id current4713266
Contextintron_variant
Intergenic0
Allele frequency0.52
P value0.00000004
Pvalue mlog7.39794000867203
P value text(EA)
Or beta1.07
%95 Ci[1.04-1.09]
PlatformAffymetrix, Illumina [up to 16852405] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002606