SNP Detail For rs4712524
1.Mapping Information
Human SNP ID rs4712524
Human chromosome chr6
Human SNP position 20657634
Pig chromosome chr7
Pig SNP position 16929599
2.Annotation Information
PubMed ID18711366
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18711366
StudySNPs in KCNQ1 are associated with susceptibility to type 2 diabetes in East Asian and European populations.
Disease/TraitType 2 diabetes
Initial sample194 Japanese ancestry cases, 1,558 Japanese ancestry controls
Replication sample5,324 East Asian ancestry cases, 7,037 East Asian ancestry controls, 4,085 European ancestry cases, 5,302 European ancestry controls
Region6p22.3
Chromosome idchr6
Chromosome position20657634
Reported geneCDKAL1
Mapped geneCDKAL1
Upstream gene id
Downstream gene id
SNP gene ids54901
Upstream gene distance
Downstream gene distance
SNP risk allelers4712524-G
SNPsrs4712524
Merged0
SNP id current4712524
Contextintron_variant
Intergenic0
Allele frequency0.42
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta1.22
%95 Ci[1.15-1.31]
PlatformAffymetrix [207097]
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST000221