Human SNP ID | rs4712523 |
---|---|
Human chromosome | chr6 |
Human SNP position | 20657333 |
Pig chromosome | chr7 |
Pig SNP position | 16929293 |
PubMed ID | 19401414 |
---|---|
Journal | Diabetes |
Link | www.ncbi.nlm.nih.gov/pubmed/19401414 |
Study | Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population. |
Disease/Trait | Type 2 diabetes |
Initial sample | 519 Japanese ancestry cases, 503 Japanese ancestry controls |
Replication sample | 5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls |
Region | 6p22.3 |
Chromosome id | chr6 |
Chromosome position | 20657333 |
Reported gene | CDKAL1 |
Mapped gene | CDKAL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54901 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4712523-G |
SNPs | rs4712523 |
Merged | 0 |
SNP id current | 4712523 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.41 |
P value | 7E-20 |
Pvalue mlog | 19.1549019599857 |
P value text | |
Or beta | 1.27 |
%95 Ci | [1.21-1.33] |
Platform | Illumina [482625] |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST000383 |
PubMed ID | 19734900 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19734900 |
Study | Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia. |
Disease/Trait | Type 2 diabetes and other traits |
Initial sample | 679 European ancestry cases, 697 European ancestry controls |
Replication sample | 5,579 European ancestry cases, 7,096 European ancestry controls |
Region | 6p22.3 |
Chromosome id | chr6 |
Chromosome position | 20657333 |
Reported gene | CDKAL1 |
Mapped gene | CDKAL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54901 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4712523-G |
SNPs | rs4712523 |
Merged | 0 |
SNP id current | 4712523 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.14-1.26] |
Platform | Illumina [392365] |
CNV | N |
Mapped trait | type II diabetes mellitus, autoantibody measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360, http://www.ebi.ac.uk/efo/EFO_0004866 |
Study accession | GCST000478 |