SNP Detail For rs4709845
1.Mapping Information
Human SNP ID rs4709845
Human chromosome chr6
Human SNP position 164479565
Pig chromosome chr18
Pig SNP position 22306009
2.Annotation Information
PubMed ID20516156
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20516156
StudyGenome-wide association study of major recurrent depression in the U.K. population.
Disease/TraitMajor depressive disorder
Initial sample1,636 European ancestry cases, 1,594 European ancestry controls
Replication sample1,418 European ancestry cases, 1,918 European ancestry controls
Region6q27
Chromosome idchr6
Chromosome position164479565
Reported geneLOC728275
Mapped geneLOC105378107 - LOC105378111
Upstream gene id105378107
Downstream gene id105378111
SNP gene ids
Upstream gene distance141760
Downstream gene distance313010
SNP risk allelers4709845-?
SNPsrs4709845
Merged0
SNP id current4709845
Contextintergenic_variant
Intergenic1
Allele frequency0.85
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta1.21
%95 Ci[NR]
PlatformIllumina [471747]
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST000689