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SNP Detail For rs4702484
1.Mapping Information
| Human SNP ID | rs4702484 |
|---|---|
| Human chromosome | chr5 |
| Human SNP position | 7649747 |
| Pig chromosome | chr16 |
| Pig SNP position | 80551890 |
2.Annotation Information
| PubMed ID | 22864933 |
|---|---|
| Journal | Cancer |
| Link | www.ncbi.nlm.nih.gov/pubmed/22864933 |
| Study | Identification of novel germline polymorphisms governing capecitabine sensitivity. |
| Disease/Trait | Capecitabine sensitivity |
| Initial sample | Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines |
| Replication sample | NA |
| Region | 5p15.31 |
| Chromosome id | chr5 |
| Chromosome position | 7649747 |
| Reported gene | MTRR, ADCY2 |
| Mapped gene | ADCY2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 108 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs4702484-? |
| SNPs | rs4702484 |
| Merged | 0 |
| SNP id current | 4702484 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | NR |
| P value | 0.0000006 |
| Pvalue mlog | 6.22184874961635 |
| P value text | |
| Or beta | |
| %95 Ci | |
| Platform | NR [~ 2000000] |
| CNV | N |
| Mapped trait | response to antineoplastic agent |
| Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097327 |
| Study accession | GCST001368 |
| PubMed ID | 22864933 |
| Journal | Cancer |
| Link | www.ncbi.nlm.nih.gov/pubmed/22864933 |
| Study | Identification of novel germline polymorphisms governing capecitabine sensitivity. |
| Disease/Trait | Capecitabine sensitivity |
| Initial sample | Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines |
| Replication sample | NA |
| Region | 5p15.31 |
| Chromosome id | chr5 |
| Chromosome position | 7649747 |
| Reported gene | MTRR, ADCY2 |
| Mapped gene | ADCY2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 108 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs4702484-? |
| SNPs | rs4702484 |
| Merged | 0 |
| SNP id current | 4702484 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | NR |
| P value | 0.00000005 |
| Pvalue mlog | 7.30102999566398 |
| P value text | (EA) |
| Or beta | |
| %95 Ci | |
| Platform | NR [~ 2000000] |
| CNV | N |
| Mapped trait | response to antineoplastic agent |
| Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097327 |
| Study accession | GCST001368 |
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