SNP Detail For rs470119
1.Mapping Information
Human SNP ID rs470119
Human chromosome chr22
Human SNP position 50528485
Pig chromosome chr5
Pig SNP position 110560695
2.Annotation Information
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitMean corpuscular hemoglobin
Initial sampleUp to 14,362 Japanese ancestry individuals
Replication sampleNA
Region22q13.33
Chromosome idchr22
Chromosome position50528485
Reported geneTYMP, KLHDC7B, SCO2, NCAPH2
Mapped geneTYMP
Upstream gene id
Downstream gene id
SNP gene ids1890
Upstream gene distance
Downstream gene distance
SNP risk allelers470119-T
SNPsrs470119
Merged0
SNP id current470119
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.26
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta0.074
%95 Ci[0.049-0.099] unit decrease
PlatformIllumina [561583]
CNVN
Mapped traithemoglobin measurement, mean corpuscular hemoglobin
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004509, http://www.ebi.ac.uk/efo/EFO_0004527
Study accessionGCST000587