Human SNP ID | rs470119 |
---|---|
Human chromosome | chr22 |
Human SNP position | 50528485 |
Pig chromosome | chr5 |
Pig SNP position | 110560695 |
PubMed ID | 20139978 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Mean corpuscular hemoglobin |
Initial sample | Up to 14,362 Japanese ancestry individuals |
Replication sample | NA |
Region | 22q13.33 |
Chromosome id | chr22 |
Chromosome position | 50528485 |
Reported gene | TYMP, KLHDC7B, SCO2, NCAPH2 |
Mapped gene | TYMP |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1890 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs470119-T |
SNPs | rs470119 |
Merged | 0 |
SNP id current | 470119 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.26 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 0.074 |
%95 Ci | [0.049-0.099] unit decrease |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | hemoglobin measurement, mean corpuscular hemoglobin |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004509, http://www.ebi.ac.uk/efo/EFO_0004527 |
Study accession | GCST000587 |