SNP Detail For rs4699587
1.Mapping Information
Human SNP ID rs4699587
Human chromosome chr4
Human SNP position 94694618
Pig chromosome chr8
Pig SNP position 134298758
2.Annotation Information
PubMed ID23518928
JournalMol Endocrinol
Linkwww.ncbi.nlm.nih.gov/pubmed/23518928
StudyTSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.
Disease/TraitEstradiol plasma levels (breast cancer)
Initial sample700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases
Replication sampleNA
Region4q22.3
Chromosome idchr4
Chromosome position94694618
Reported geneNR
Mapped genePDLIM5 - BMPR1B-AS1
Upstream gene id10611
Downstream gene id100507012
SNP gene ids
Upstream gene distance26391
Downstream gene distance49050
SNP risk allelers4699587-?
SNPsrs4699587
Merged0
SNP id current4699587
Contextintron_variant
Intergenic1
Allele frequency0.048
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta1.763
%95 Ci[1.416-2.194] unit increase
PlatformIllumina [563945]
CNVN
Mapped traitestradiol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004697
Study accessionGCST001914