SNP Detail For rs4698934
1.Mapping Information
Human SNP ID rs4698934
Human chromosome chr4
Human SNP position 105218230
Pig chromosome chr8
Pig SNP position 125067890
2.Annotation Information
PubMed ID24980573
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/24980573
StudyIdentification of a melanoma susceptibility locus and somatic mutation in TET2.
Disease/TraitMelanoma
Initial sample494 European ancestry cases, 5,628 European ancestry controls
Replication sample5,383 European ancestry cases, 13,033 European ancestry controls
Region4q24
Chromosome idchr4
Chromosome position105218230
Reported geneTET2
Mapped geneTET2, TET2-AS1
Upstream gene id
Downstream gene id
SNP gene ids54790, 104384744
Upstream gene distance
Downstream gene distance
SNP risk allelers4698934-?
SNPsrs4698934
Merged0
SNP id current4698934
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta1.18
%95 Ci[1.10-1.25]
PlatformAffymetrix, Illumina [1579307] (imputed)
CNVN
Mapped traitmelanoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000756
Study accessionGCST002514