Human SNP ID | rs4698934 |
---|---|
Human chromosome | chr4 |
Human SNP position | 105218230 |
Pig chromosome | chr8 |
Pig SNP position | 125067890 |
PubMed ID | 24980573 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/24980573 |
Study | Identification of a melanoma susceptibility locus and somatic mutation in TET2. |
Disease/Trait | Melanoma |
Initial sample | 494 European ancestry cases, 5,628 European ancestry controls |
Replication sample | 5,383 European ancestry cases, 13,033 European ancestry controls |
Region | 4q24 |
Chromosome id | chr4 |
Chromosome position | 105218230 |
Reported gene | TET2 |
Mapped gene | TET2, TET2-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54790, 104384744 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4698934-? |
SNPs | rs4698934 |
Merged | 0 |
SNP id current | 4698934 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 1.18 |
%95 Ci | [1.10-1.25] |
Platform | Affymetrix, Illumina [1579307] (imputed) |
CNV | N |
Mapped trait | melanoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000756 |
Study accession | GCST002514 |