Human SNP ID | rs4698412 |
---|---|
Human chromosome | chr4 |
Human SNP position | 15735725 |
Pig chromosome | chr8 |
Pig SNP position | 10694284 |
PubMed ID | 21084426 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21084426 |
Study | Genome-wide association study confirms BST1 and suggests a locus on 12q24 as the risk loci for Parkinson__s disease in the European population. |
Disease/Trait | Parkinson__s disease |
Initial sample | 1,039 European ancestry cases, 1,984 European ancestry controls |
Replication sample | 3,232 European ancestry cases, 7,064 European ancestry controls |
Region | 4p15.32 |
Chromosome id | chr4 |
Chromosome position | 15735725 |
Reported gene | BST1 |
Mapped gene | BST1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 683 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4698412-A |
SNPs | rs4698412 |
Merged | 0 |
SNP id current | 4698412 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.55 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.14 |
%95 Ci | [1.08-1.20] |
Platform | Illumina [492929] |
CNV | N |
Mapped trait | Parkinson__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002508 |
Study accession | GCST000874 |
PubMed ID | 22451204 |
Journal | Ann Neurol |
Link | www.ncbi.nlm.nih.gov/pubmed/22451204 |
Study | Meta-analysis of Parkinson__s disease: identification of a novel locus, RIT2. |
Disease/Trait | Parkinson__s disease |
Initial sample | 4,238 European ancestry cases, 4,239 European ancestry controls |
Replication sample | 3,738 European ancestry cases, 2,111 European ancestry controls |
Region | 4p15.32 |
Chromosome id | chr4 |
Chromosome position | 15735725 |
Reported gene | BST1 |
Mapped gene | BST1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 683 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4698412-? |
SNPs | rs4698412 |
Merged | 0 |
SNP id current | 4698412 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.14 |
%95 Ci | [NR] |
Platform | Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | Parkinson__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002508 |
Study accession | GCST001430 |