Human SNP ID | rs4680 |
---|---|
Human chromosome | chr22 |
Human SNP position | 19963748 |
Pig chromosome | chr14 |
Pig SNP position | 55036173 |
PubMed ID | 24816252 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24816252 |
Study | An atlas of genetic influences on human blood metabolites. |
Disease/Trait | Blood metabolite levels |
Initial sample | 7,824 European ancestry individuals |
Replication sample | NA |
Region | 22q11.21 |
Chromosome id | chr22 |
Chromosome position | 19963748 |
Reported gene | COMT |
Mapped gene | COMT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1312 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4680-A |
SNPs | rs4680 |
Merged | 0 |
SNP id current | 4680 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.51 |
P value | 5E-178 |
Pvalue mlog | 177.301029995663 |
P value text | (X-11593--O-methylascorbate) |
Or beta | 0.049 |
%95 Ci | [0.045-0.053] unit decrease |
Platform | Affymetrix, Illumina [2100000] (imputed) |
CNV | N |
Mapped trait | blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002443 |
PubMed ID | 24816252 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24816252 |
Study | An atlas of genetic influences on human blood metabolites. |
Disease/Trait | Blood metabolite levels |
Initial sample | 7,824 European ancestry individuals |
Replication sample | NA |
Region | 22q11.21 |
Chromosome id | chr22 |
Chromosome position | 19963748 |
Reported gene | COMT |
Mapped gene | COMT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1312 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4680-A |
SNPs | rs4680 |
Merged | 0 |
SNP id current | 4680 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.51 |
P value | 0.0000000000001 |
Pvalue mlog | 13 |
P value text | (X-01911) |
Or beta | 0.044 |
%95 Ci | [0.032-0.056] unit decrease |
Platform | Affymetrix, Illumina [2100000] (imputed) |
CNV | N |
Mapped trait | blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002443 |