SNP Detail For rs4673553
1.Mapping Information
Human SNP ID rs4673553
Human chromosome chr2
Human SNP position 210743655
Pig chromosome chr15
Pig SNP position 125338994
2.Annotation Information
PubMed ID25811787
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25811787
StudyModulation of Genetic Associations with Serum Urate Levels by Body-Mass-Index in Humans.
Disease/TraitUrate levels in obese individuals
Initial sample4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals
Replication sampleNA
Region2q34
Chromosome idchr2
Chromosome position210743655
Reported geneCPS1
Mapped geneCPS1 - RPS27P10
Upstream gene id1373
Downstream gene id646233
SNP gene ids
Upstream gene distance64548
Downstream gene distance555223
SNP risk allelers4673553-G
SNPsrs4673553
Merged0
SNP id current4673553
Contextintergenic_variant
Intergenic1
Allele frequency0.45
P value0.000003
Pvalue mlog5.52287874528033
P value text(women)
Or beta0.099
%95 Ci[0.058-0.14] kg/m2 decrease
PlatformAffymetrix, Illumina [at least 188473] (imputed)
CNVN
Mapped traitobese body mass index status, urate measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007041, http://www.ebi.ac.uk/efo/EFO_0004531
Study accessionGCST002828