SNP Detail For rs4663969
1.Mapping Information
Human SNP ID rs4663969
Human chromosome chr2
Human SNP position 233746667
Pig chromosome chr15
Pig SNP position 148146292
2.Annotation Information
PubMed ID25884002
JournalOpen Forum Infect Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/25884002
StudyPhenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.
Disease/TraitTotal bilirubin levels in HIV-1 infection
Initial sample2,547 individuals
Replication sampleNA
Region2q37.1
Chromosome idchr2
Chromosome position233746667
Reported geneUGT1A10, UGT1A, UGT1A7, UGT1A8, UGT1A4, UGT1A5, UGT1A6, UGT1A3, UGT1A9, DNAJB3, UGT1A2P
Mapped geneUGT1A7, UGT1A10, UGT1A4, UGT1A3, UGT1A9, UGT1A8, UGT1A5, UGT1A6
Upstream gene id
Downstream gene id
SNP gene ids54577, 54575, 54657, 54659, 54600, 54576, 54579, 54578
Upstream gene distance
Downstream gene distance
SNP risk allelers4663969-?
SNPsrs4663969
Merged0
SNP id current4663969
Contextintron_variant
Intergenic0
Allele frequency0.4651
P value0.0000000000000004
Pvalue mlog15.397940008672
P value text
Or beta0.07697108
%95 Ci[NR] unit increase
PlatformIllumina [5954294] (imputed)
CNVN
Mapped traitHIV-1 infection, bilirubin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0004570
Study accessionGCST002745