Human SNP ID | rs4663969 |
---|---|
Human chromosome | chr2 |
Human SNP position | 233746667 |
Pig chromosome | chr15 |
Pig SNP position | 148146292 |
PubMed ID | 25884002 |
---|---|
Journal | Open Forum Infect Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/25884002 |
Study | Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols. |
Disease/Trait | Total bilirubin levels in HIV-1 infection |
Initial sample | 2,547 individuals |
Replication sample | NA |
Region | 2q37.1 |
Chromosome id | chr2 |
Chromosome position | 233746667 |
Reported gene | UGT1A10, UGT1A, UGT1A7, UGT1A8, UGT1A4, UGT1A5, UGT1A6, UGT1A3, UGT1A9, DNAJB3, UGT1A2P |
Mapped gene | UGT1A7, UGT1A10, UGT1A4, UGT1A3, UGT1A9, UGT1A8, UGT1A5, UGT1A6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54577, 54575, 54657, 54659, 54600, 54576, 54579, 54578 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4663969-? |
SNPs | rs4663969 |
Merged | 0 |
SNP id current | 4663969 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.4651 |
P value | 0.0000000000000004 |
Pvalue mlog | 15.397940008672 |
P value text | |
Or beta | 0.07697108 |
%95 Ci | [NR] unit increase |
Platform | Illumina [5954294] (imputed) |
CNV | N |
Mapped trait | HIV-1 infection, bilirubin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0004570 |
Study accession | GCST002745 |