SNP Detail For rs4662945
1.Mapping Information
Human SNP ID rs4662945
Human chromosome chr2
Human SNP position 129458470
Pig chromosome chr15
Pig SNP position 64228540
2.Annotation Information
PubMed ID24483146
JournalBMC Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/24483146
StudyDiscovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.
Disease/TraitResponse to cytidine analogues (gemcitabine)
Initial sample60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines
Replication sampleNA
Region2q21.1
Chromosome idchr2
Chromosome position129458470
Reported geneLOC151121
Mapped geneLOC105373613
Upstream gene id
Downstream gene id
SNP gene ids105373613
Upstream gene distance
Downstream gene distance
SNP risk allelers4662945-?
SNPsrs4662945
Merged0
SNP id current4662945
Contextintergenic_variant
Intergenic0
Allele frequency
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [1348798]
CNVN
Mapped traitresponse to gemcitabine
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0036272
Study accessionGCST002343