Human SNP ID | rs4662945 |
---|---|
Human chromosome | chr2 |
Human SNP position | 129458470 |
Pig chromosome | chr15 |
Pig SNP position | 64228540 |
PubMed ID | 24483146 |
---|---|
Journal | BMC Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/24483146 |
Study | Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines. |
Disease/Trait | Response to cytidine analogues (gemcitabine) |
Initial sample | 60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines |
Replication sample | NA |
Region | 2q21.1 |
Chromosome id | chr2 |
Chromosome position | 129458470 |
Reported gene | LOC151121 |
Mapped gene | LOC105373613 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105373613 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4662945-? |
SNPs | rs4662945 |
Merged | 0 |
SNP id current | 4662945 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [1348798] |
CNV | N |
Mapped trait | response to gemcitabine |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0036272 |
Study accession | GCST002343 |