Human SNP ID | rs4660306 |
---|---|
Human chromosome | chr1 |
Human SNP position | 45513003 |
Pig chromosome | chr6 |
Pig SNP position | 153261402 |
PubMed ID | 23824729 |
---|---|
Journal | Am J Clin Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/23824729 |
Study | Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease. |
Disease/Trait | Homocysteine levels |
Initial sample | 44,147 European ancestry individuals |
Replication sample | NA |
Region | 1p34.1 |
Chromosome id | chr1 |
Chromosome position | 45513003 |
Reported gene | MMACHC |
Mapped gene | PRDX1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5052 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4660306-T |
SNPs | rs4660306 |
Merged | 0 |
SNP id current | 4660306 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.33 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 0.0435 |
%95 Ci | [0.03-0.057] unit increase |
Platform | Affymetrix, Illumina [2090256] (imputed) |
CNV | N |
Mapped trait | homocysteine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004578 |
Study accession | GCST002087 |