SNP Detail For rs4660306
1.Mapping Information
Human SNP ID rs4660306
Human chromosome chr1
Human SNP position 45513003
Pig chromosome chr6
Pig SNP position 153261402
2.Annotation Information
PubMed ID23824729
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/23824729
StudyCommon genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.
Disease/TraitHomocysteine levels
Initial sample44,147 European ancestry individuals
Replication sampleNA
Region1p34.1
Chromosome idchr1
Chromosome position45513003
Reported geneMMACHC
Mapped genePRDX1
Upstream gene id
Downstream gene id
SNP gene ids5052
Upstream gene distance
Downstream gene distance
SNP risk allelers4660306-T
SNPsrs4660306
Merged0
SNP id current4660306
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.33
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta0.0435
%95 Ci[0.03-0.057] unit increase
PlatformAffymetrix, Illumina [2090256] (imputed)
CNVN
Mapped traithomocysteine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004578
Study accessionGCST002087