Human SNP ID | rs4657482 |
---|---|
Human chromosome | chr1 |
Human SNP position | 165862412 |
Pig chromosome | chr4 |
Pig SNP position | 92543055 |
PubMed ID | 19483681 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19483681 |
Study | A genome-wide association study of testicular germ cell tumor. |
Disease/Trait | Testicular germ cell tumor |
Initial sample | 730 cases, 1,435 controls |
Replication sample | 571 cases, 1,806 controls |
Region | 1q24.1 |
Chromosome id | chr1 |
Chromosome position | 165862412 |
Reported gene | intergenic |
Mapped gene | UCK2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7371 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4657482-A |
SNPs | rs4657482 |
Merged | 0 |
SNP id current | 4657482 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.33 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.14 |
%95 Ci | [0.99-1.31] |
Platform | Illumina [307666] |
CNV | N |
Mapped trait | testicular carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005088 |
Study accession | GCST000414 |
PubMed ID | 23666239 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23666239 |
Study | Meta-analysis identifies four new loci associated with testicular germ cell tumor. |
Disease/Trait | Testicular germ cell tumor |
Initial sample | 582 European ancestry male cases, 1,056 European ancestry male controls |
Replication sample | 3,560 European ancestry male cases, 8,510 European ancestry male controls |
Region | 1q24.1 |
Chromosome id | chr1 |
Chromosome position | 165862412 |
Reported gene | UCK2 |
Mapped gene | UCK2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7371 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4657482-A |
SNPs | rs4657482 |
Merged | 0 |
SNP id current | 4657482 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.43 |
%95 Ci | [1.22-1.67] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | testicular carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005088 |
Study accession | GCST002023 |