SNP Detail For rs4657482
1.Mapping Information
Human SNP ID rs4657482
Human chromosome chr1
Human SNP position 165862412
Pig chromosome chr4
Pig SNP position 92543055
2.Annotation Information
PubMed ID19483681
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19483681
StudyA genome-wide association study of testicular germ cell tumor.
Disease/TraitTesticular germ cell tumor
Initial sample730 cases, 1,435 controls
Replication sample571 cases, 1,806 controls
Region1q24.1
Chromosome idchr1
Chromosome position165862412
Reported geneintergenic
Mapped geneUCK2
Upstream gene id
Downstream gene id
SNP gene ids7371
Upstream gene distance
Downstream gene distance
SNP risk allelers4657482-A
SNPsrs4657482
Merged0
SNP id current4657482
Contextintron_variant
Intergenic0
Allele frequency0.33
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.14
%95 Ci[0.99-1.31]
PlatformIllumina [307666]
CNVN
Mapped traittesticular carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005088
Study accessionGCST000414
PubMed ID23666239
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23666239
StudyMeta-analysis identifies four new loci associated with testicular germ cell tumor.
Disease/TraitTesticular germ cell tumor
Initial sample582 European ancestry male cases, 1,056 European ancestry male controls
Replication sample3,560 European ancestry male cases, 8,510 European ancestry male controls
Region1q24.1
Chromosome idchr1
Chromosome position165862412
Reported geneUCK2
Mapped geneUCK2
Upstream gene id
Downstream gene id
SNP gene ids7371
Upstream gene distance
Downstream gene distance
SNP risk allelers4657482-A
SNPsrs4657482
Merged0
SNP id current4657482
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.43
%95 Ci[1.22-1.67]
PlatformIllumina [NR]
CNVN
Mapped traittesticular carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005088
Study accessionGCST002023