Human SNP ID | rs4656940 |
---|---|
Human chromosome | chr1 |
Human SNP position | 160860478 |
Pig chromosome | chr4 |
Pig SNP position | 97577199 |
PubMed ID | 21102463 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21102463 |
Study | Genome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci. |
Disease/Trait | Crohn__s disease |
Initial sample | 6,333 European ancestry cases, 15,056 European ancestry controls |
Replication sample | 15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios |
Region | 1q23.3 |
Chromosome id | chr1 |
Chromosome position | 160860478 |
Reported gene | CD244, ITLN1 |
Mapped gene | CD244 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51744 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4656940-A |
SNPs | rs4656940 |
Merged | 0 |
SNP id current | 4656940 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.801 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.09-1.21] |
Platform | Affymetrix, Illumina [953241] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST000879 |