SNP Detail For rs4656940
1.Mapping Information
Human SNP ID rs4656940
Human chromosome chr1
Human SNP position 160860478
Pig chromosome chr4
Pig SNP position 97577199
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region1q23.3
Chromosome idchr1
Chromosome position160860478
Reported geneCD244, ITLN1
Mapped geneCD244
Upstream gene id
Downstream gene id
SNP gene ids51744
Upstream gene distance
Downstream gene distance
SNP risk allelers4656940-A
SNPsrs4656940
Merged0
SNP id current4656940
Contextintron_variant
Intergenic0
Allele frequency0.801
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta1.15
%95 Ci[1.09-1.21]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879