Human SNP ID | rs4655303 |
---|---|
Human chromosome | chr1 |
Human SNP position | 213661300 |
Pig chromosome | chr9 |
Pig SNP position | 142682612 |
PubMed ID | 23319000 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23319000 |
Study | Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. |
Disease/Trait | Metabolite levels (5-HIAA) |
Initial sample | up to 398 European ancestry individuals |
Replication sample | NA |
Region | 1q32.3 |
Chromosome id | chr1 |
Chromosome position | 213661300 |
Reported gene | intergenic |
Mapped gene | LOC105372910 - LOC105372912 |
Upstream gene id | 105372910 |
Downstream gene id | 105372912 |
SNP gene ids | |
Upstream gene distance | 82420 |
Downstream gene distance | 70123 |
SNP risk allele | rs4655303-T |
SNPs | rs4655303 |
Merged | 0 |
SNP id current | 4655303 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.2187 |
%95 Ci | unit increase |
Platform | Illumina [5767231] (imputed) |
CNV | N |
Mapped trait | 5-HIAA measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005132 |
Study accession | GCST001820 |