SNP Detail For rs4622329
1.Mapping Information
Human SNP ID rs4622329
Human chromosome chr12
Human SNP position 101928157
Pig chromosome chr5
Pig SNP position 86269308
2.Annotation Information
PubMed ID23273568
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23273568
StudyMeta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.
Disease/TraitSystemic lupus erythematosus
Initial sample1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls
Replication sample3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls
Region12q23.2
Chromosome idchr12
Chromosome position101928157
Reported geneDRAM1
Mapped geneLOC105369941 - CCDC53
Upstream gene id105369941
Downstream gene id51019
SNP gene ids
Upstream gene distance3438
Downstream gene distance84683
SNP risk allelers4622329-A
SNPsrs4622329
Merged0
SNP id current4622329
Contextintron_variant
Intergenic1
Allele frequency0.56
P value0.000000000009
Pvalue mlog11.0457574905606
P value text
Or beta1.1905
%95 Ci
PlatformIllumina [2100739] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST001795