Human SNP ID | rs4613763 |
---|---|
Human chromosome | chr5 |
Human SNP position | 40392626 |
Pig chromosome | chr16 |
Pig SNP position | 26701940 |
PubMed ID | 18587394 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18587394 |
Study | Genome-wide association defines more than 30 distinct susceptibility loci for Crohn__s disease. |
Disease/Trait | Crohn__s disease |
Initial sample | 3,230 European ancestry cases, 4,829 European ancestry controls |
Replication sample | 1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls |
Region | 5p13.1 |
Chromosome id | chr5 |
Chromosome position | 40392626 |
Reported gene | PTGER4 |
Mapped gene | LOC105374736 - LOC105374737 |
Upstream gene id | 105374736 |
Downstream gene id | 105374737 |
SNP gene ids | |
Upstream gene distance | 46071 |
Downstream gene distance | 207254 |
SNP risk allele | rs4613763-C |
SNPs | rs4613763 |
Merged | 0 |
SNP id current | 4613763 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.13 |
P value | 7E-27 |
Pvalue mlog | 26.1549019599857 |
P value text | |
Or beta | 1.32 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [635547] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST000207 |
PubMed ID | 21833088 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/21833088 |
Study | Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. |
Disease/Trait | Multiple sclerosis |
Initial sample | 9,772 European ancestry cases, 16,849 European ancestry controls |
Replication sample | 4,218 European ancestry cases, 7,296 European ancestry controls |
Region | 5p13.1 |
Chromosome id | chr5 |
Chromosome position | 40392626 |
Reported gene | PTGER4 |
Mapped gene | LOC105374736 - LOC105374737 |
Upstream gene id | 105374736 |
Downstream gene id | 105374737 |
SNP gene ids | |
Upstream gene distance | 46071 |
Downstream gene distance | 207254 |
SNP risk allele | rs4613763-G |
SNPs | rs4613763 |
Merged | 0 |
SNP id current | 4613763 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000000000000003 |
Pvalue mlog | 15.5228787452803 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.18-1.22] |
Platform | Illumina [465434] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST001198 |