SNP Detail For rs460626
1.Mapping Information
Human SNP ID rs460626
Human chromosome chr5
Human SNP position 155057701
Pig chromosome chr16
Pig SNP position 74085428
2.Annotation Information
PubMed ID26039976
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26039976
StudyGenome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.
Disease/TraitHIV-1 viral setpoint
Initial sample326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases
Replication sampleNA
Region5q33.2
Chromosome idchr5
Chromosome position155057701
Reported geneKIF4B, SGCD
Mapped geneKIF4B - LOC100131520
Upstream gene id285643
Downstream gene id100131520
SNP gene ids
Upstream gene distance39576
Downstream gene distance53451
SNP risk allelers460626-G
SNPsrs460626
Merged
SNP id current460626
Contextintergenic_variant
Intergenic1
Allele frequency0.07718
P value0.000008
Pvalue mlog5.09691001300805
P value text(Yun)
Or beta0.7899
%95 Ciunit increase
PlatformIllumina [up to 528294]
CNVN
Mapped traitHIV-1 infection, HIV viral set point measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006319
Study accessionGCST002976