Human SNP ID | rs460626 |
---|---|
Human chromosome | chr5 |
Human SNP position | 155057701 |
Pig chromosome | chr16 |
Pig SNP position | 74085428 |
PubMed ID | 26039976 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/26039976 |
Study | Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations. |
Disease/Trait | HIV-1 viral setpoint |
Initial sample | 326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases |
Replication sample | NA |
Region | 5q33.2 |
Chromosome id | chr5 |
Chromosome position | 155057701 |
Reported gene | KIF4B, SGCD |
Mapped gene | KIF4B - LOC100131520 |
Upstream gene id | 285643 |
Downstream gene id | 100131520 |
SNP gene ids | |
Upstream gene distance | 39576 |
Downstream gene distance | 53451 |
SNP risk allele | rs460626-G |
SNPs | rs460626 |
Merged | |
SNP id current | 460626 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.07718 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (Yun) |
Or beta | 0.7899 |
%95 Ci | unit increase |
Platform | Illumina [up to 528294] |
CNV | N |
Mapped trait | HIV-1 infection, HIV viral set point measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006319 |
Study accession | GCST002976 |