Human SNP ID | rs4589502 |
---|---|
Human chromosome | chr15 |
Human SNP position | 66862731 |
Pig chromosome | chr1 |
Pig SNP position | 182561398 |
PubMed ID | 24658283 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/24658283 |
Study | A genome-wide gene-environment interaction analysis for tobacco smoke and lung cancer susceptibility. |
Disease/Trait | Lung cancer (smoking interaction) |
Initial sample | 1,506 Han Chinese ancestry smoker cases, 825 Han Chinese ancestry non-smoker cases, 1,309 Han Chinese ancestry smoker controls, 1,768 Han Chinese ancestry non-smoker controls |
Replication sample | 912 Han Chinese ancestry smoker cases, 622 Han Chinese ancestry non-smoker cases, 572 Han Chinese ancestry smoker controls, 917 Han Chinese ancestry non-smoker controls |
Region | 15q22.31 |
Chromosome id | chr15 |
Chromosome position | 66862731 |
Reported gene | SMAD6, SMAD3 |
Mapped gene | LOC105376718 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376718 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4589502-T |
SNPs | rs4589502 |
Merged | 0 |
SNP id current | 4589502 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.55 |
%95 Ci | [1.29-1.87] |
Platform | Affymetrix [591370] |
CNV | N |
Mapped trait | lung carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001071 |
Study accession | GCST002392 |