Human SNP ID | rs458685 |
---|---|
Human chromosome | chr21 |
Human SNP position | 29805194 |
Pig chromosome | chr13 |
Pig SNP position | 203760591 |
PubMed ID | 17903305 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/17903305 |
Study | A genome-wide association study of breast and prostate cancer in the NHLBI__s Framingham Heart Study. |
Disease/Trait | Breast cancer |
Initial sample | 58 cases, 665 controls |
Replication sample | NA |
Region | 21q21.3 |
Chromosome id | chr21 |
Chromosome position | 29805194 |
Reported gene | GRIK1 |
Mapped gene | GRIK1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2897 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs458685-? |
SNPs | rs458685 |
Merged | 0 |
SNP id current | 458685 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [70897] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST000079 |