SNP Detail For rs458685
1.Mapping Information
Human SNP ID rs458685
Human chromosome chr21
Human SNP position 29805194
Pig chromosome chr13
Pig SNP position 203760591
2.Annotation Information
PubMed ID17903305
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/17903305
StudyA genome-wide association study of breast and prostate cancer in the NHLBI__s Framingham Heart Study.
Disease/TraitBreast cancer
Initial sample58 cases, 665 controls
Replication sampleNA
Region21q21.3
Chromosome idchr21
Chromosome position29805194
Reported geneGRIK1
Mapped geneGRIK1
Upstream gene id
Downstream gene id
SNP gene ids2897
Upstream gene distance
Downstream gene distance
SNP risk allelers458685-?
SNPsrs458685
Merged0
SNP id current458685
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta
%95 Ci
PlatformAffymetrix [70897]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST000079