SNP Detail For rs45616239
1.Mapping Information
Human SNP ID rs45616239
Human chromosome chr4
Human SNP position 122335010
Pig chromosome chr8
Pig SNP position 108926375
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region4q27
Chromosome idchr4
Chromosome position122335010
Reported geneKIAA1109
Mapped geneKIAA1109
Upstream gene id
Downstream gene id
SNP gene ids84162
Upstream gene distance
Downstream gene distance
SNP risk allelers45616239-?
SNPsrs45616239
Merged0
SNP id current45616239
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(Shared)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitatopic eczema, psoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000274, http://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740