Human SNP ID | rs4555772 |
---|---|
Human chromosome | chr5 |
Human SNP position | 75006833 |
Pig chromosome | chr7 |
Pig SNP position | 22246874 |
PubMed ID | 23362303 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23362303 |
Study | Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu |
Disease/Trait | Stearic acid (18:0) plasma levels |
Initial sample | 8,961 European ancestry individuals |
Replication sample | |
Region | 5q13.3 |
Chromosome id | chr5 |
Chromosome position | 75006833 |
Reported gene | GCNT4 |
Mapped gene | LOC105379040 - GCNT4 |
Upstream gene id | 105379040 |
Downstream gene id | 51301 |
SNP gene ids | |
Upstream gene distance | 31075 |
Downstream gene distance | 20631 |
SNP risk allele | rs4555772-A |
SNPs | rs4555772 |
Merged | 0 |
SNP id current | 4555772 |
Context | non_coding_transcript_exon_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 0.0888 |
%95 Ci | unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001840 |