SNP Detail For rs4555772
1.Mapping Information
Human SNP ID rs4555772
Human chromosome chr5
Human SNP position 75006833
Pig chromosome chr7
Pig SNP position 22246874
2.Annotation Information
PubMed ID23362303
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23362303
StudyGenome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu
Disease/TraitStearic acid (18:0) plasma levels
Initial sample8,961 European ancestry individuals
Replication sample
Region5q13.3
Chromosome idchr5
Chromosome position75006833
Reported geneGCNT4
Mapped geneLOC105379040 - GCNT4
Upstream gene id105379040
Downstream gene id51301
SNP gene ids
Upstream gene distance31075
Downstream gene distance20631
SNP risk allelers4555772-A
SNPsrs4555772
Merged0
SNP id current4555772
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.0888
%95 Ciunit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001840