Human SNP ID | rs45479699 |
---|---|
Human chromosome | chr10 |
Human SNP position | 12707063 |
Pig chromosome | chr10 |
Pig SNP position | 65165460 |
PubMed ID | 25461247 |
---|---|
Journal | Pharmacogenet Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/25461247 |
Study | Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols. |
Disease/Trait | Response to efavirenz-containing treatment in HIV 1 infection (virologic failure) |
Initial sample | Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals |
Replication sample | NA |
Region | 10p13 |
Chromosome id | chr10 |
Chromosome position | 12707063 |
Reported gene | NR |
Mapped gene | CAMK1D |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57118 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs45479699-A |
SNPs | rs45479699 |
Merged | 0 |
SNP id current | 45479699 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (phenotype 2) |
Or beta | 5.62 |
%95 Ci | [NR] |
Platform | Illumina [> 8000000] (imputed) |
CNV | N |
Mapped trait | HIV-1 infection, response to efavirenz, virologic response measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006904, http://www.ebi.ac.uk/efo/EFO_0006906 |
Study accession | GCST002771 |