SNP Detail For rs45479699
1.Mapping Information
Human SNP ID rs45479699
Human chromosome chr10
Human SNP position 12707063
Pig chromosome chr10
Pig SNP position 65165460
2.Annotation Information
PubMed ID25461247
JournalPharmacogenet Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/25461247
StudyGenome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.
Disease/TraitResponse to efavirenz-containing treatment in HIV 1 infection (virologic failure)
Initial sampleUp to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals
Replication sampleNA
Region10p13
Chromosome idchr10
Chromosome position12707063
Reported geneNR
Mapped geneCAMK1D
Upstream gene id
Downstream gene id
SNP gene ids57118
Upstream gene distance
Downstream gene distance
SNP risk allelers45479699-A
SNPsrs45479699
Merged0
SNP id current45479699
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text(phenotype 2)
Or beta5.62
%95 Ci[NR]
PlatformIllumina [> 8000000] (imputed)
CNVN
Mapped traitHIV-1 infection, response to efavirenz, virologic response measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006904, http://www.ebi.ac.uk/efo/EFO_0006906
Study accessionGCST002771