Human SNP ID | rs4527850 |
---|---|
Human chromosome | chr8 |
Human SNP position | 133184606 |
Pig chromosome | chr4 |
Pig SNP position | 8184139 |
PubMed ID | 23300278 |
---|---|
Journal | Diabetes |
Link | www.ncbi.nlm.nih.gov/pubmed/23300278 |
Study | Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India. |
Disease/Trait | Type 2 diabetes |
Initial sample | 842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls |
Replication sample | up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 |
Region | 8q24.22 |
Chromosome id | chr8 |
Chromosome position | 133184606 |
Reported gene | WISP1 |
Mapped gene | LOC105375769 - WISP1 |
Upstream gene id | 105375769 |
Downstream gene id | 8840 |
SNP gene ids | |
Upstream gene distance | 18273 |
Downstream gene distance | 6433 |
SNP risk allele | rs4527850-T |
SNPs | rs4527850 |
Merged | 0 |
SNP id current | 4527850 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.75 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Punjabi Sikhs) |
Or beta | 1.23 |
%95 Ci | [1.13 - 1.34] |
Platform | Illumina [1232008] (imputed) |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST001809 |