Human SNP ID | rs4518370 |
---|---|
Human chromosome | chr5 |
Human SNP position | 82884487 |
Pig chromosome | chr2 |
Pig SNP position | 93279844 |
PubMed ID | 25057126 |
---|---|
Journal | J Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25057126 |
Study | Meta-analysis identifies loci affecting levels of the potential osteoarthritis biomarkers sCOMP and uCTX-II with genome wide significance. |
Disease/Trait | Osteoarthritis biomarkers |
Initial sample | up to 4,654 European ancestry individuals |
Replication sample | 964 European ancestry individuals |
Region | 5q14.2 |
Chromosome id | chr5 |
Chromosome position | 82884487 |
Reported gene | SCARNA18, XRCC4, TMEM167A |
Mapped gene | LINC01338 - LOC105379051 |
Upstream gene id | 102546175 |
Downstream gene id | 105379051 |
SNP gene ids | |
Upstream gene distance | 24651 |
Downstream gene distance | 28880 |
SNP risk allele | rs4518370-G |
SNPs | rs4518370 |
Merged | 0 |
SNP id current | 4518370 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.75 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (uCTX-II) |
Or beta | 0.11 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [up to 1961964] (imputed) |
CNV | N |
Mapped trait | osteoarthritis biomarker measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005890 |
Study accession | GCST002540 |