SNP Detail For rs4502542
1.Mapping Information
Human SNP ID rs4502542
Human chromosome chr3
Human SNP position 59935294
Pig chromosome chr13
Pig SNP position 45751517
2.Annotation Information
PubMed ID22760553
JournalTransl Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/22760553
StudyGenome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.
Disease/TraitResponse to citalopram treatment
Initial sample1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases
Replication sampleNA
Region3p14.2
Chromosome idchr3
Chromosome position59935294
Reported geneFHIT
Mapped geneFHIT
Upstream gene id
Downstream gene id
SNP gene ids2272
Upstream gene distance
Downstream gene distance
SNP risk allelers4502542-T
SNPsrs4502542
Merged0
SNP id current4502542
Contextintron_variant
Intergenic0
Allele frequency0.017
P value0.000002
Pvalue mlog5.69897000433601
P value text(EA + AA - GSE)
Or beta
%95 Ci
PlatformAffymetrix [421789]
CNVN
Mapped traitresponse to antidepressant
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0036276
Study accessionGCST001591