Human SNP ID | rs4491792 |
---|---|
Human chromosome | chr20 |
Human SNP position | 16760180 |
Pig chromosome | chr17 |
Pig SNP position | 28649927 |
PubMed ID | 23726511 |
---|---|
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23726511 |
Study | Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder. |
Disease/Trait | Post-traumatic stress disorder (asjusted for relatedness) |
Initial sample | up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls |
Replication sample | NA |
Region | 20p12.1 |
Chromosome id | chr20 |
Chromosome position | 16760180 |
Reported gene | OTOR |
Mapped gene | OTOR - LOC105372543 |
Upstream gene id | 56914 |
Downstream gene id | 105372543 |
SNP gene ids | |
Upstream gene distance | 8016 |
Downstream gene distance | 205258 |
SNP risk allele | rs4491792-? |
SNPs | rs4491792 |
Merged | 0 |
SNP id current | 4491792 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (Whole cohort; EA) |
Or beta | |
%95 Ci | |
Platform | Illumina [up to 871502] |
CNV | N |
Mapped trait | post-traumatic stress disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001358 |
Study accession | GCST002037 |