SNP Detail For rs4491792
1.Mapping Information
Human SNP ID rs4491792
Human chromosome chr20
Human SNP position 16760180
Pig chromosome chr17
Pig SNP position 28649927
2.Annotation Information
PubMed ID23726511
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23726511
StudyGenome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.
Disease/TraitPost-traumatic stress disorder (asjusted for relatedness)
Initial sampleup to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls
Replication sampleNA
Region20p12.1
Chromosome idchr20
Chromosome position16760180
Reported geneOTOR
Mapped geneOTOR - LOC105372543
Upstream gene id56914
Downstream gene id105372543
SNP gene ids
Upstream gene distance8016
Downstream gene distance205258
SNP risk allelers4491792-?
SNPsrs4491792
Merged0
SNP id current4491792
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(Whole cohort; EA)
Or beta
%95 Ci
PlatformIllumina [up to 871502]
CNVN
Mapped traitpost-traumatic stress disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001358
Study accessionGCST002037