Human SNP ID | rs4488809 |
---|---|
Human chromosome | chr3 |
Human SNP position | 189638472 |
Pig chromosome | chr13 |
Pig SNP position | 136316263 |
PubMed ID | 21725308 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21725308 |
Study | A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese. |
Disease/Trait | Lung cancer |
Initial sample | 2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls |
Replication sample | 6,313 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls |
Region | 3q28 |
Chromosome id | chr3 |
Chromosome position | 189638472 |
Reported gene | TP63 |
Mapped gene | TP63 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8626 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4488809-C |
SNPs | rs4488809 |
Merged | 0 |
SNP id current | 4488809 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 7E-26 |
Pvalue mlog | 25.1549019599857 |
P value text | |
Or beta | 1.26 |
%95 Ci | [1.21-1.32] |
Platform | Affymetrix [906703] |
CNV | N |
Mapped trait | lung carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001071 |
Study accession | GCST001140 |
PubMed ID | 23143601 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23143601 |
Study | Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia. |
Disease/Trait | Lung cancer |
Initial sample | 5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls |
Replication sample | 1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls |
Region | 3q28 |
Chromosome id | chr3 |
Chromosome position | 189638472 |
Reported gene | TP63 |
Mapped gene | TP63 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8626 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4488809-C |
SNPs | rs4488809 |
Merged | 0 |
SNP id current | 4488809 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.42 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.12-1.26] |
Platform | Illumina [596032] |
CNV | N |
Mapped trait | lung carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001071 |
Study accession | GCST001740 |