SNP Detail For rs4488809
1.Mapping Information
Human SNP ID rs4488809
Human chromosome chr3
Human SNP position 189638472
Pig chromosome chr13
Pig SNP position 136316263
2.Annotation Information
PubMed ID21725308
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21725308
StudyA genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese.
Disease/TraitLung cancer
Initial sample2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls
Replication sample6,313 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls
Region3q28
Chromosome idchr3
Chromosome position189638472
Reported geneTP63
Mapped geneTP63
Upstream gene id
Downstream gene id
SNP gene ids8626
Upstream gene distance
Downstream gene distance
SNP risk allelers4488809-C
SNPsrs4488809
Merged0
SNP id current4488809
Contextintron_variant
Intergenic0
Allele frequency0.47
P value7E-26
Pvalue mlog25.1549019599857
P value text
Or beta1.26
%95 Ci[1.21-1.32]
PlatformAffymetrix [906703]
CNVN
Mapped traitlung carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001071
Study accessionGCST001140
PubMed ID23143601
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23143601
StudyGenome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.
Disease/TraitLung cancer
Initial sample5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls
Replication sample1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls
Region3q28
Chromosome idchr3
Chromosome position189638472
Reported geneTP63
Mapped geneTP63
Upstream gene id
Downstream gene id
SNP gene ids8626
Upstream gene distance
Downstream gene distance
SNP risk allelers4488809-C
SNPsrs4488809
Merged0
SNP id current4488809
Contextintron_variant
Intergenic0
Allele frequency0.42
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.19
%95 Ci[1.12-1.26]
PlatformIllumina [596032]
CNVN
Mapped traitlung carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001071
Study accessionGCST001740