SNP Detail For rs4453858
1.Mapping Information
Human SNP ID rs4453858
Human chromosome chr3
Human SNP position 67407074
Pig chromosome chr13
Pig SNP position 53699793
2.Annotation Information
PubMed ID26305897
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26305897
StudyGenome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).
Disease/TraitDiabetic kidney disease
Initial sample1,564 African American cases, 369 African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry dia
Replication sample950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 Eu
Region3p14.1
Chromosome idchr3
Chromosome position67407074
Reported geneSUCLG2
Mapped geneSUCLG2
Upstream gene id
Downstream gene id
SNP gene ids8801
Upstream gene distance
Downstream gene distance
SNP risk allelers4453858-?
SNPsrs4453858
Merged
SNP id current4453858
Contextintron_variant
Intergenic0
Allele frequency0.41
P value0.000002
Pvalue mlog5.69897000433601
P value text(American Indian, additive )
Or beta1.4084507
%95 Ci
PlatformAffymetrix [NR]
CNVN
Mapped traitdiabetic nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000401
Study accessionGCST003098