Human SNP ID | rs4452313 |
---|---|
Human chromosome | chr3 |
Human SNP position | 17005540 |
Pig chromosome | chr13 |
Pig SNP position | 4370324 |
PubMed ID | 24390342 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 3p24.3 |
Chromosome id | chr3 |
Chromosome position | 17005540 |
Reported gene | PLCL2 |
Mapped gene | PLCL2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23228 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4452313-T |
SNPs | rs4452313 |
Merged | 0 |
SNP id current | 4452313 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.29 |
P value | 0.00000000005 |
Pvalue mlog | 10.3010299956639 |
P value text | (EA) |
Or beta | 1.11 |
%95 Ci | [1.08-1.15] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |
PubMed ID | 24390342 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 3p24.3 |
Chromosome id | chr3 |
Chromosome position | 17005540 |
Reported gene | PLCL2 |
Mapped gene | PLCL2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23228 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4452313-T |
SNPs | rs4452313 |
Merged | 0 |
SNP id current | 4452313 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.35 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.06-1.12] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |