Human SNP ID | rs441810 |
---|---|
Human chromosome | chr21 |
Human SNP position | 41326980 |
Pig chromosome | chr13 |
Pig SNP position | 214957680 |
PubMed ID | 24941225 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24941225 |
Study | Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China. |
Disease/Trait | Elevated serum carcinoembryonic antigen levels |
Initial sample | 1,999 Chinese ancestry individuals |
Replication sample | NA |
Region | 21q22.3 |
Chromosome id | chr21 |
Chromosome position | 41326980 |
Reported gene | FAM3B |
Mapped gene | FAM3B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54097 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs441810-? |
SNPs | rs441810 |
Merged | 0 |
SNP id current | 441810 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [709211] (imputed) |
CNV | N |
Mapped trait | serum carcinoembryonic antigen measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005760 |
Study accession | GCST002485 |
PubMed ID | 23300138 |
Journal | Gut |
Link | www.ncbi.nlm.nih.gov/pubmed/23300138 |
Study | A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk. |
Disease/Trait | Tumor biomarkers |
Initial sample | 3,451 Han Chinese ancestry individuals |
Replication sample | 10,326 Chinese ancestry individuals |
Region | 21q22.3 |
Chromosome id | chr21 |
Chromosome position | 41326980 |
Reported gene | FAM3B |
Mapped gene | FAM3B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54097 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs441810-G |
SNPs | rs441810 |
Merged | 0 |
SNP id current | 441810 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.24 |
P value | 3E-22 |
Pvalue mlog | 21.5228787452803 |
P value text | (CEA) |
Or beta | 0.069 |
%95 Ci | [0.040-0.098] ng/ml increase |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | cancer biomarker measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005127 |
Study accession | GCST001808 |